PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6050_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 257aa    MW: 28745.1 Da    PI: 7.6703
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6050_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-2076125255
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                          +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a+++++g
  cra_locus_6050_iso_1_len_1144_ver_3  76 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALAYDEAALRFKG 125
                                          7********.**********94....45************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-3375134IPR001471AP2/ERF domain
CDDcd000181.05E-2076134No hitNo description
SuperFamilySSF541713.2E-2276134IPR016177DNA-binding domain
SMARTSM003802.7E-3876139IPR001471AP2/ERF domain
PfamPF008472.5E-1476125IPR001471AP2/ERF domain
PROSITE profilePS5103224.97476133IPR001471AP2/ERF domain
PRINTSPR003671.2E-117788IPR001471AP2/ERF domain
PRINTSPR003671.2E-1199115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MTAMVSALSQ VIGSSSSSSS SRGSTNINNH HHQQVSELIG APPHEYQSTP AHVLEIQSQQ  60
PLQEQGNYNN NQRRRHYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFDTAE AAALAYDEAA  120
LRFKGNKAKL NFPERVQSLS SKTTPHFISY LPPNPPHHHH HQLPSHHNYP YNNNVFSSAA  180
GGGTFVSSHD ELSANSSSSF SMPISDHHQQ QEQGGQQFHQ GFSFNPIYNN IETSNSTSSD  240
PNSESWEEFD NSYGRRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2775136163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008356833.19e-47PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH546e-45EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLC1KH723e-45C1KH72_JUGNI; RAP2-like protein
STRINGVIT_17s0000g00200.t013e-44(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165